rs52059590 SNP Detail

Summary

• ID
  rs52059590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69419460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTA AGCCTCCTGC TTCTCACAGC
  Y
  AAATGCAACT GATCCTGAAA TCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146729509	ENSMUSSNP214613	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320331736	CHEV_2_69427173	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52059590					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69419460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11711	CpG island 11711	896 bp distal
Rr373310	regulatory region 373310	1646 bp upstream
Rr558430	regulatory region 558430	732 bp distal
Rr558431	regulatory region 558431	1519 bp proximal