rs52060246 SNP Detail

Summary

• ID
  rs52060246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116406970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTATAACT ATATATATAT
  GTTATACATA TATATACTAT ATACAGTATA TGTATGTATA CTATATACAT ATATGTATGT
  GTGTGTATAT ATATGTGATG CAGACAGTTG TAGAGTGTTG TTTAGGGAAT AATAGCAGAA
  AAATCTGTAC ATCACAATAC AGATAAAACT ACATGGTACA AGAGTGAGCC ATTGGGTAAA
  Y
  GACACTCCAG CGATGAGTTC TGAGTGACTG AGATCTGTGG CACAGGGCTC TAGTGAGTGT
  AGCTGCATAC TTCCCCTCCT CCTTTGAGAC AGGGTCTCTG TGTAACCCTG GCTGTCCTGG
  AACTCAGATT CTCTGCCCTC TACCTTCCGA GTGCTAGGAT TAAAGGAGTT TACCCGCATG
  CCTGGGCCCC CCTCTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60436678	NES15940329	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52060246					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436678	NES15940329	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116406970 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583752	regulatory region 583752			851 bp proximal
Rr583753	regulatory region 583753			1256 bp proximal
Sass6	SAS-6 centriolar assembly protein			Intron
Trmt13	tRNA methyltransferase 13			Intron
				Noncoding-Transcript-Variant