rs52061179 SNP Detail

Summary

• ID
  rs52061179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15076720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GAGTGATGTG GGAAACCTGA CGTGGAAGGA AGCAGCAGAG GCTCCAGATG
  R
  CAAATGAGGA AAACCTGGGC ACACACAGTA ACTGCCTTTC CAGACACTCG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148695703	ENSMUSSNP2692694	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52061179					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15076720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	528 bp proximal
Gm37844	predicted gene, 37844	within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660168	regulatory region 660168	389 bp distal
Rr660169	regulatory region 660169	684 bp proximal
Rr660170	regulatory region 660170	1455 bp proximal
Tssr76486	transcription start site region 76486	447 bp upstream
Tssr76487	transcription start site region 76487	466 bp upstream
Tssr76488	transcription start site region 76488	579 bp upstream
Tssr76489	transcription start site region 76489	662 bp upstream
Tssr76490	transcription start site region 76490	1039 bp upstream
Tssr76491	transcription start site region 76491	1238 bp upstream
Tssr80488	transcription start site region 80488	900 bp downstream