rs52062050 SNP Detail

Summary

• ID
  rs52062050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98153341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTCTCTC CTCCCCAGCA GTGCCCCATC AAGTACTACA
  TAAAATGTAA CGTTTGTGCA TGAACACTTA CACTGTGCCA CACCCACCCC ACGCTGGATG
  R
  TTCCACAAAG CTCATTGAAC TCATATCTTT CACACCCAAG AAGTTGTGTG TGTGTGTGTG
  TGTGTGTGTG TTCGCCCGTT TGATTAAAAC ACTGTAATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148453761	ENSMUSSNP5443968	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325078966	CHEV_15_98085891	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52062050					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98153341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7649	CpG island 7649	1303 bp proximal
Gm62000	predicted gene, 62000	64 bp upstream
H1f7	H1.7 linker histone	526 bp downstream
Rr311340	regulatory region 311340	558 bp proximal
Tssr136230	transcription start site region 136230	1836 bp downstream
Tssr136231	transcription start site region 136231	1949 bp downstream