rs52062469 SNP Detail

Summary

• ID
  rs52062469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69049422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTCATCCC ATGCAGGGAG TTTCCTTACT CTTGCCCAGC
  TACTCCAGAT TGGCCACTTC GGGATCCCAT CAAGTCAATC AGGCATGGCC AGCCTTAGTG
  Y
  CCATTGCTGC TCTGGGCTTA GCTTAGGGCT GCACAGTGAA GGAACCCAAG TGTATGAGGC
  CCAGGGAGTA CTACCAGCTC ATGCAGAGAG CACTATCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss132350056	ENSMUSSNP743103	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323727823	CHEV_11_68972098	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52062469					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69049422 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	within coordinates
Cpgi3111	CpG island 3111	1261 bp distal
Rr449891	regulatory region 449891	1597 bp distal
Rr449892	regulatory region 449892	1326 bp distal
Rr449893	regulatory region 449893	466 bp distal
Tssr102419	transcription start site region 102419	1695 bp downstream
Tssr102420	transcription start site region 102420	1680 bp downstream
Tssr102421	transcription start site region 102421	1545 bp downstream
Tssr102422	transcription start site region 102422	1535 bp downstream
Tssr102423	transcription start site region 102423	1515 bp downstream
Tssr102424	transcription start site region 102424	1486 bp downstream