rs52063250 SNP Detail

Summary

• ID
  rs52063250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53376201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGGCAG TGGCTTTCCT
  AGATGCACTG CACTTATTTT TAACAGTGTG TTGGGAGGCT GAACTGCCCT GTGCTAAGAG
  CGCTGGGCTG ATAGAAGGAA AATAGGGACT GACACAAACA GTTGAACTCA GTGGCAACCT
  TTTCCGCTAC CCTTGCTGCT AAGCATAACA CAATGACTAA GTTATAAAGA AAAACACCAC
  R
  GCAGTTTTCA GTCTCACACG TACAGGTGTC AGGGATTTTT TTTTTTTTTT TAAGTTAAAA
  GTTTACAGAT GCAAATGGAG TTCACAGCTC ACACCCTTTC TTCAGCCTCT GCAGTGAAAA
  TTTGCTATTT TGCTTTTGAA CACTTGGTCC CTGTCACCAA AATCAAAGTA CACGTATAAC
  TCATAAACAT AAACTTACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137751765	ENSMUSSNP501659	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52063250					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53376201 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	within coordinates
Rr267617	regulatory region 267617	1801 bp proximal