rs52063569 SNP Detail

Summary

• ID
  rs52063569
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135254476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGAC TAAGTCACTC CCAAGCTACC
  T
  AGATCTCAAG GATAATAGCA CTGCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145530840	ENSMUSSNP3772119	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss319989150	CHEV_1_137223315	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52063569					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135254476 () rs orientation: forward

Symbol	Name	Function Class
Lmod1	leiomodin 1 (smooth muscle)	within coordinates
Rr12584	regulatory region 12584	1876 bp distal
Rr28593	regulatory region 28593	75 bp distal
Tssr8958	transcription start site region 8958	1918 bp downstream
Tssr8959	transcription start site region 8959	1882 bp downstream