rs52063898 SNP Detail

Summary

• ID
  rs52063898
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156939027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCTCACACA TCTGTCACTT GATCTCACAG GACAGACATA
  GAGCTACGCT TGGACATTAT GTAGATCTGG ACGGAGGCTG AACCTCTGTA GACAGAACCC
  R
  GGGGGCTTGA GAGGAAAGAG CTTGTTTTCA GGCACGAGAG TCTTTGAGCT TACGCCCCCA
  TACCCTTCCC GTGCATGGTC TGCCTTCTGC TGGAAAGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148091841	ENSMUSSNP891632	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320584152	CHEV_2_156922843	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52063898					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156939027 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	1430 bp distal
Rr568432	regulatory region 568432	1873 bp distal
Samhd1	SAM domain and HD domain, 1	427 bp downstream
Tldc2	TBC/LysM associated domain containing 2	625 bp downstream
Tssr27104	transcription start site region 27104	1351 bp downstream
Tssr27105	transcription start site region 27105	1396 bp downstream
Tssr27106	transcription start site region 27106	1485 bp downstream
Tssr27107	transcription start site region 27107	1629 bp downstream
Tssr27108	transcription start site region 27108	1755 bp downstream
Tssr27109	transcription start site region 27109	1827 bp downstream
Tssr27110	transcription start site region 27110	1881 bp downstream