rs52064022 SNP Detail

Summary

• ID
  rs52064022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136378858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGGAAGAT TTTGTTTACA GAAAAAAAAA TATTGATGAC
  TCCTGAGTTT CAGATGGGCA TGCTGCCGTG GCTTGGCTTC TCTTGGGCTT TTTTTTTTTT
  Y
  CCTTCACATT TTATGTCATT GGTTTAAAAG TCCTGACACA GCTTCCAGAC AACATTTTGT
  CATGCATAAG ATTTTCAGGA TTAGTATTTT GAGATGGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135936923	ENSMUSSNP2552923	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320974487	CHEV_3_136336061	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52064022					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136378858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13862	CpG island 13862	708 bp distal
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	within coordinates
Rr398057	regulatory region 398057	1995 bp downstream
Rr585838	regulatory region 585838	594 bp distal
Rr585839	regulatory region 585839	1021 bp proximal
Rr585840	regulatory region 585840	1436 bp proximal
Tssr31877	transcription start site region 31877	within coordinates