rs52065418 SNP Detail

Summary

• ID
  rs52065418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59654590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCTCCG GCATTCTGGA
  GGCCACAGGC CACACAGTTA ATAGTTCCAA AATCTCTGGA CCTACAAGTC GCGGCAACAC
  AGCTCTGACT TCCAGGAGTC CAGAGGCCGC GACAAAAGAG GTCCCGCATC CTGGAGCCCC
  CACGCTGCGG CAACACAGCT CCTGCATCCA GGATCCCAGT CACAACCTCA GACCACCATA
  R
  TAAAGGCAAC GCGTTACACG CAGGTGCCGC ACTAACACAC CCAAGGAGTC CGTCTGCCGG
  CTCCAAAGGA TTGCTCACCA ATTCTCAAAA ATAAAGGTAT CTGGGTTGTC AAAAATCTTA
  ATAAGCCCAA ATCTAGAATG TTTTGGTCAA ATAGGATGCA CTTTCACTAC TAGAATCCAC
  AAGCCCAGCT GACCTTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61014585	NES16116701	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs52065418					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014585	NES16116701	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59654590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19176	CpG island 19176	within coordinates
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	within coordinates
Rr346	regulatory region 346	198 bp proximal
Rr647544	regulatory region 647544	1168 bp distal
Rr647545	regulatory region 647545	within coordinates
Rr647546	regulatory region 647546	197 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr2280	transcription start site region 2280	331 bp downstream
Tssr66968	transcription start site region 66968	1144 bp downstream
Tssr66969	transcription start site region 66969	408 bp downstream
Tssr72702	transcription start site region 72702	1847 bp upstream
Tssr72703	transcription start site region 72703	1752 bp upstream
Tssr72704	transcription start site region 72704	1686 bp upstream
Tssr72705	transcription start site region 72705	1656 bp upstream
Tssr72706	transcription start site region 72706	848 bp upstream
Tssr72707	transcription start site region 72707	237 bp downstream
Tssr72708	transcription start site region 72708	259 bp downstream
Tssr72709	transcription start site region 72709	310 bp downstream