rs52065714 SNP Detail

Summary

• ID
  rs52065714
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108888949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCAATTC TTGGTCTGCC
  CTGTCCCTCC CTCTCAGCCA CACAAATCGG ACTCAGGAAA CAAAGCTTGT GTTCTCAGCA
  GGAAGTGCAG TTTTAATCAG TGGATATGGC AAAGACGGCG GTGGGAGCTG GCGCCACCTT
  GTGGCTGGAT GCTCAGGCCC TCAGTTACAG TCCATCTCAG AGTCTTCCAA ATCAGTCTCC
  R
  CAGCACAGAG GTCATCCAGG GCAGCCTCTG AGCCAAAAGG AAGAGGGGTC TGAGGTTAAC
  TCGACAGCGT GGGGGCTTGG AGGCCCCCAT GCTCCCTAGC GTCACAGGAA CCAACCAGTC
  CCTTCTATGC ACAGGCTTTG CTCCCTCAGC GACTGTGAGC AAAAGTGACA CAAAGGCAAT
  TCGGACAGAT CTTTGTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61451631	NES16833321	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52065714					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61451631	NES16833321	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108888949 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	within coordinates
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	within coordinates
Rr686957	regulatory region 686957	within coordinates
Rr686958	regulatory region 686958	198 bp distal
Rr686959	regulatory region 686959	52 bp distal
Trex1	three prime repair exonuclease 1	158 bp upstream
Tssr91572	transcription start site region 91572	1610 bp upstream
Tssr91573	transcription start site region 91573	1476 bp upstream
Tssr91574	transcription start site region 91574	1243 bp upstream
Tssr91575	transcription start site region 91575	1196 bp upstream
Tssr91576	transcription start site region 91576	1110 bp upstream
Tssr91577	transcription start site region 91577	622 bp upstream
Tssr91578	transcription start site region 91578	175 bp upstream
Tssr91579	transcription start site region 91579	110 bp upstream