rs52065971 SNP Detail

Summary

• ID
  rs52065971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134582660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCT GCTGACAGAG TTCATGGTCC
  Y
  GACTACCAAG ATGTCCTCGG AGTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133782470	ENSMUSSNP991718	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321980820	CHEV_6_134555715	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52065971					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134582660 () rs orientation: forward

Symbol	Name	Function Class
Gm38910	predicted gene, 38910	within coordinates
Rr133397	regulatory region 133397	1460 bp distal
Rr133398	regulatory region 133398	1541 bp proximal
Rr147832	regulatory region 147832	1861 bp distal
Rr147833	regulatory region 147833	342 bp proximal
Tssr59244	transcription start site region 59244	73 bp upstream