rs52067881 SNP Detail

Summary

• ID
  rs52067881
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93350419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATTCCA TTGTACTGAT
  CACAAGGATG AAACCATTCT TATTCATTCA TCTAGAAAGA ATTTGTTGTT TTGATCAGCA
  CACAATTAAC AAAAATTTCC AACAATAGTA TGTTTTGAAA TGAGTTGTTT CCATAGCTGG
  GGAAACAGGA CAACATATTT TCTTTGCTTT TTAAAAAGAT TTATTTATTT ATTTTATATG
  T
  GAGTACACTG TCGATCCCTT TAGACACACC AGAAGAGAGC ATCAGATCCC ATTACAGATG
  GGGTTGTGAG CCACCATGTG GTTGCTGGGA ATTGAACTCA GGACTTATGG AAGAGCAGTC
  AAGTGCTCTT AGCGGCTAAA CCATCTCTCC AGCTCCTCTG TGCATTTTCT AATCGCTCCA
  AATAGTCCCC TCCCCAAAAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135485734	ENSMUSSNP2301979	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52067881					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93350419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	413 bp proximal
Gm37245	predicted gene, 37245	within coordinates
Gm56800	predicted gene, 56800	within coordinates
Gm66249	predicted gene, 66249	within coordinates
Tchh	trichohyalin	within coordinates
Tssr960	transcription start site region 960	315 bp upstream
Tssr961	transcription start site region 961	891 bp upstream
Tssr30345	transcription start site region 30345	723 bp downstream
Tssr30346	transcription start site region 30346	698 bp downstream
Tssr30347	transcription start site region 30347	339 bp upstream
Tssr30348	transcription start site region 30348	378 bp upstream
Tssr30349	transcription start site region 30349	384 bp upstream
Tssr30350	transcription start site region 30350	426 bp upstream
Tssr30351	transcription start site region 30351	457 bp upstream
Tssr30352	transcription start site region 30352	506 bp upstream
Tssr30353	transcription start site region 30353	518 bp upstream
Tssr30354	transcription start site region 30354	536 bp upstream
Tssr30355	transcription start site region 30355	555 bp upstream
Tssr30356	transcription start site region 30356	568 bp upstream
Tssr30357	transcription start site region 30357	666 bp upstream
Tssr30358	transcription start site region 30358	781 bp upstream
Tssr30359	transcription start site region 30359	810 bp upstream
Tssr30360	transcription start site region 30360	840 bp upstream
Tssr30361	transcription start site region 30361	1165 bp upstream
Tssr30362	transcription start site region 30362	1179 bp upstream
Tssr30363	transcription start site region 30363	1322 bp upstream
Tssr30364	transcription start site region 30364	1393 bp upstream
Tssr30365	transcription start site region 30365	1428 bp upstream
Tssr30366	transcription start site region 30366	1480 bp upstream
Tssr30367	transcription start site region 30367	1524 bp upstream
Tssr30368	transcription start site region 30368	1541 bp upstream
Tssr30369	transcription start site region 30369	1554 bp upstream
Tssr30370	transcription start site region 30370	1561 bp upstream
Tssr30371	transcription start site region 30371	1581 bp upstream
Tssr30372	transcription start site region 30372	1594 bp upstream
Tssr30373	transcription start site region 30373	1645 bp upstream
Tssr30374	transcription start site region 30374	1663 bp upstream
Tssr30375	transcription start site region 30375	1676 bp upstream
Tssr30376	transcription start site region 30376	1702 bp upstream
Tssr30377	transcription start site region 30377	1724 bp upstream
Tssr30378	transcription start site region 30378	1757 bp upstream
Tssr30379	transcription start site region 30379	1775 bp upstream
Tssr30380	transcription start site region 30380	1855 bp upstream
Tssr30381	transcription start site region 30381	1873 bp upstream
Tssr30382	transcription start site region 30382	1932 bp upstream
Tssr30383	transcription start site region 30383	1943 bp upstream
Tssr30384	transcription start site region 30384	1952 bp upstream
Tssr30385	transcription start site region 30385	1968 bp upstream
Tssr30386	transcription start site region 30386	1989 bp upstream
Tssr34352	transcription start site region 34352	752 bp downstream
Tssr34353	transcription start site region 34353	773 bp downstream
Tssr34354	transcription start site region 34354	783 bp downstream
Tssr34355	transcription start site region 34355	921 bp downstream
Tssr34356	transcription start site region 34356	1593 bp downstream
Tssr34357	transcription start site region 34357	1638 bp downstream
Tssr34358	transcription start site region 34358	1690 bp downstream
Tssr34359	transcription start site region 34359	1759 bp downstream
Tssr34360	transcription start site region 34360	1840 bp downstream
Tssr34361	transcription start site region 34361	1861 bp downstream
Tssr34362	transcription start site region 34362	1910 bp downstream
Tssr34363	transcription start site region 34363	1937 bp downstream
Tssr34364	transcription start site region 34364	1954 bp downstream
Tssr34365	transcription start site region 34365	1968 bp downstream