rs52069148 SNP Detail

Summary

• ID
  rs52069148
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28849123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG TTGTGAGTAA ATTTGTGGGT
  W
  GTAGGGATTG AACCTGAGTC CTCTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137506880	ENSMUSSNP5066878	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52069148					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28849123 () rs orientation: forward

Symbol	Name	Function Class
Eipr1	EARP complex and GARP complex interacting protein 1	within coordinates
Rr387013	regulatory region 387013	368 bp downstream
Rr464343	regulatory region 464343	586 bp proximal
Tssr3815	transcription start site region 3815	1573 bp upstream