rs52069906 SNP Detail

Summary

• ID
  rs52069906
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127272059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCCAGCT ACCAGGGTAC
  TGATGCCCTC TTCACAAATA TACATGCAGG AAAAATATTA CATATAAAAC AAATTTTAAA
  TTGTAATCAT ATTTAATAAT AGTGAAAACA CTTAAAACAA ATTTTAACTA TTATCAGTGA
  CATTACACAA GGGAACTTTT TTTTTTTTTT GGTTTTTCAA GACAGGGTTT CTCTGTATAG
  T
  CCTGGTTGTC CTGGAACTCA CTTTGTAGAT TCAGAAATCC GCCTGCCTCT GCCTACCAAG
  TGCTGGGATT AAAGGTGTGT GCCACCACGC CCGGCCTGGA ACTATTCTTT AAGACCCTAA
  AGAAAATGGT GAGAAGCCCA TGTCTGTTAT GAAGAAGAGT TGGGATTGCA AATGTATCAG
  GGCGGCTAAC TTGTCTTCAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135864357	ENSMUSSNP2834568	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52069906					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127272059 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	1769 bp downstream
Gm43355	predicted gene 43355	1025 bp downstream