rs52070190 SNP Detail

Summary

• ID
  rs52070190
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100823135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCAAAC AAACAAACAA
  CCCCAACATT TTCCAAATTA ACCTCAGAAA GTGTCGAGTT TACTAAAGTC AAGTACTAAA
  GGAATCCTGA CAGGGAAAAC AGCTTGTTAG GTTAAAAAGC AGTGTTTACT GGGAGCACAA
  AGTATGCTTT GTGACCAATT CTTTTTTTTT GTTTTGTTTT TGTTTTTTTA AGATTTATTT
  C
  TTTATTATAT GTAAGTACAT TGTAGCTGTT TTCAGACACT CCAGAAGAGG GCATCAGATT
  TCACTAGGGA TGGTTGTGAG CCACCATGTG GTTGCTGGGA TTTGAACTCG GGACCTTTGG
  AAGAGCAGTC GGCACTCTTA ACCACTGAGC CATCTCGCCA GCCTTGTGAC CAATTCTTTA
  CCACATCAGC TTGAGCACTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135542854	ENSMUSSNP1582067	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs52070190					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100823135 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	599 bp downstream
Rr581925	regulatory region 581925	1024 bp proximal
Rr581926	regulatory region 581926	1118 bp proximal