rs52070786 SNP Detail

Summary

• ID
  rs52070786
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127272065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTACCAGG GTACTGATGC
  CCTCTTCACA AATATACATG CAGGAAAAAT ATTACATATA AAACAAATTT TAAATTGTAA
  TCATATTTAA TAATAGTGAA AACACTTAAA ACAAATTTTA ACTATTATCA GTGACATTAC
  ACAAGGGAAC TTTTTTTTTT TTTTGGTTTT TCAAGACAGG GTTTCTCTGT ATAGCCCTGG
  C
  TGTCCTGGAA CTCACTTTGT AGATTCAGAA ATCCGCCTGC CTCTGCCTAC CAAGTGCTGG
  GATTAAAGGT GTGTGCCACC ACGCCCGGCC TGGAACTATT CTTTAAGACC CTAAAGAAAA
  TGGTGAGAAG CCCATGTCTG TTATGAAGAA GAGTTGGGAT TGCAAATGTA TCAGGGCGGC
  TAACTTGTCT TCAAATGCCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135864360	ENSMUSSNP2424875	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52070786					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127272065 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	1763 bp downstream
Gm43355	predicted gene 43355	1019 bp downstream