rs52072074 SNP Detail

Summary

• ID
  rs52072074
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:120757341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTGCAG CTTTGTACAC
  ATATTTAAAG TAATAAAATA GTTTCCATGT TCTTTGAAGC ACAAATGAAT AAAGAAACTG
  TGGTATACAT ACAAAAAAGA ATATTACCTA TTTGTAAAAT ATAAGACCTT GTCCTTTTTC
  ATAATATAGA GTAGTCTCAA TAATAATAAT AATAATACAT TATTTGAGAT AAGAGTCAAA
  W
  GAGGGGGGCT GGTGAGATGG CTCAGTCGGT AAGAGCACCC GACTGTTCTT CCGAAGGTCT
  GGATTTCAAA TCCCAGCAAC CATATGGTGG CTCACAACCA TCACTAACGA GATCTGGTTC
  CCTCTTTTGG AGCATCTGAA GACAGCTACA GTGTACTTAC ATATAATAAA TGAATAAATT
  TTAAAAAAAA GAAAAAAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss134396225	ENSMUSSNP221525	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325960961	CHEV_X_118961253	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52072074					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:120757341 () rs orientation: forward

Symbol	Name	Function Class
Rr395603	regulatory region 395603	184 bp downstream