rs52072433 SNP Detail

Summary

• ID
  rs52072433
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185046747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGAGCA GAGTCAACTC
  TAAACTATAA CAATACTCAA ATGGTCTTAC AAATCTAGCC TGTACATGCT TAGCCTGAAA
  AAGACTTCTT AAAATCCCTA GTGTGGTGCT CAAGACTCCT TCAGCCTGTC CCAGCCAGTT
  ATTTTTTTTA ATTTATTTAT TATTATATAT ATTTAAGTAC ACTGTAGCTG TCTTCAGACA
  M
  ACCAGAAGAG GGCCTCAGAT CTCACCACAG ATGGTTGTGA GCCATCACAT GGTTGCTGGG
  GTTTGAACTC AGAACCTTCA GAAGAGCAGT CAGTGCTCTT AACTGCTGAG CCATCTCTCC
  AGCCCCCGGC CAGTTCTTAG TGACTGCCTT TCTATCCCTC TCACAGCCCT GGAATCCCAT
  GGCTCCTACG CACAGCACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146427432	ENSMUSSNP2302212	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
ss320174699	CHEV_1_187138429	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52072433					SNP	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185046747 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	751 bp downstream
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	1165 bp downstream
Mir215	microRNA 215	858 bp downstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	858 bp distal
Tssr10601	transcription start site region 10601	876 bp downstream