rs52075223 SNP Detail

Summary

• ID
  rs52075223
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76374751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGGACACG AACTCAAGCG
  CAACCGCGGG CGTACCAACC CACCCGGCCT CGCCTCGCCT CACGCTCGAC GGGGAAGGCG
  GAACCAATCA GCGAGCGACG TTTCCCTTCC GATTCCAGGC CCCCGACGCG GTGCTCACAC
  CCCGGGCTCC CCGGTCGCTG ATTGGCTGCG CGCGCCGCCG GTCCCGGCCG GAGGCGGGAG
  K
  CGGCGCCCCG CGCCTGCCCG CGCCCCGCTC GGCCCCCGGC CCTGCCCGCG GCGCCCGGCC
  TCCTTCCGTC CCTGCCGTGC TCCCTCCGTC TTCCGTGCGC GCCCGCTCGG CCGGCGTGCC
  TCACGCCTAA CGGGCGGCCG CGGGCGCCAA TCAGCGGGCG GCAGGGTGCC AGCCCGGGGC
  TGCGCCGGCG AATCGGCGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss401278428	MGP_WTSI_18_76401334	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	T	G	G	G	T	T	T	T	T	G	T	T	G	T	T	G	G	G	T	T	G	T	T	G	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs52075223					SNP	G	G	G	T	G	G	G	T	T	T	T	T	G	T	T	G	T	T	G	G	G	T	T	G	T	T	G	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401278428	MGP_WTSI_18_76401334	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76374751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	within coordinates
Rr540992	regulatory region 540992	within coordinates
Rr540993	regulatory region 540993	32 bp proximal
Smad2	SMAD family member 2	within coordinates
Tssr151989	transcription start site region 151989	366 bp downstream
Tssr151990	transcription start site region 151990	318 bp downstream
Tssr151991	transcription start site region 151991	216 bp downstream
Tssr151992	transcription start site region 151992	within coordinates
Tssr151993	transcription start site region 151993	212 bp upstream
Tssr151994	transcription start site region 151994	455 bp upstream