rs52076673 SNP Detail

Summary

• ID
  rs52076673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106109190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATTTTAC TTTACCTAGA
  AGGAGAATTG CAGTGATTCA TTTAAAAATA AAATTGTTAT TGCCTTGCCT CTGTGCCTGT
  TCTCTCTTGA ATTGCTTAAG TGTTAAATCT ATGACCACTG CACTCATGAG ACTCTTTATA
  TACATTTTTT GGACGTATTA TTTTGTTTGT CTTTGTTTTT GTTTTTTCAA GACAGGGCTT
  Y
  TCTGTATAGC TCTTGTTGTT CTGGAACTCA CTCTGTAGAC CAGGCTGGCC TGGAACTCAG
  AAATCTGCCT GCCTCTGCCT CCCAAGTGCT GGGATTAAAG GCATGCGCCA CCACTGCCCG
  GCACGTTATT TCTTTATGTA TGTTTATCAT GCCCTCCTGT AGAGGTTAGA GGCCAACCTC
  TGGGAGTTGG TTTTCTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132766165	ENSMUSSNP4501053	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52076673					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106109190 () rs orientation: forward

Symbol	Name	Function Class
Ccdc47	coiled-coil domain containing 47	1841 bp upstream
Cpgi4018	CpG island 4018	841 bp distal
Ddx42	DEAD box helicase 42	within coordinates
Gm74325	predicted gene, 74325	1765 bp downstream
Rr245973	regulatory region 245973	within coordinates
Rr369397	regulatory region 369397	1480 bp downstream
Rr403037	regulatory region 403037	1798 bp downstream
Tssr105500	transcription start site region 105500	1887 bp downstream
Tssr105501	transcription start site region 105501	1832 bp downstream
Tssr105502	transcription start site region 105502	1396 bp downstream
Tssr105503	transcription start site region 105503	1388 bp downstream
Tssr105504	transcription start site region 105504	1356 bp downstream
Tssr105505	transcription start site region 105505	1306 bp downstream