rs52077143 SNP Detail

Summary

• ID
  rs52077143
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32305992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGT AATCCCGTAG TATCAAGATG
  G
  GCCTGCCCTC TGTTTGTCGG GGCTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325136569	CHEV_16_32487260	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52077143					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32305992 () rs orientation: forward

Symbol	Name	Function Class
Gm59898	predicted gene, 59898	885 bp upstream
Rr514710	regulatory region 514710	1621 bp distal
Rr514711	regulatory region 514711	within coordinates
Rr514712	regulatory region 514712	695 bp proximal
Rr514713	regulatory region 514713	896 bp proximal
Rr514714	regulatory region 514714	1597 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	422 bp downstream
Tssr4847	transcription start site region 4847	441 bp downstream
Tssr137989	transcription start site region 137989	919 bp upstream
Tssr140806	transcription start site region 140806	999 bp upstream
Tssr140807	transcription start site region 140807	13 bp upstream
Tssr140808	transcription start site region 140808	within coordinates
Tssr140809	transcription start site region 140809	21 bp downstream
Tssr140810	transcription start site region 140810	51 bp downstream
Tssr140811	transcription start site region 140811	469 bp downstream
Tssr140812	transcription start site region 140812	493 bp downstream
Tssr140813	transcription start site region 140813	635 bp downstream
Tssr140814	transcription start site region 140814	699 bp downstream
Tssr140815	transcription start site region 140815	723 bp downstream