rs52077814 SNP Detail

Summary

• ID
  rs52077814
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:118688199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAGTAAGT GGGATTTCAC
  TCAAAGGCTT CAACAAGTCT TCAGCAAAGT CTAGTGTTCA GCCGCACTTC ACACTTGAAC
  CAAGCACAGT CATCTTCGAT TCTCTCTGAA CAAACGGGGT ATCTCAGTCG ACGTTGATTC
  CAGGAAGCAA ACTCGAAATA CCTGCAGCTA CTTCTGATGC ACCAACACCT GCTACTTCTA
  W
  TTTCATACTC TGCATCCCCA TCCATCTTCA TCAGATACCC CCCACCCCCA GCCCTGCCCA
  GCCCAGCCCA GCCCAGCCCA GCCCAGCCCA ACCCAGCCCA GCCCAGCCCC CACCCCGCCC
  GTGCCATTTC CTATGGAACC TTTCTTAATC GACTGCTCTT TCAGTCTTCT ACAGACAGCC
  AAGGAGAGCC CATTTCCTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61322054	NES16929584	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52077814					SNP	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61322054	NES16929584	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:118688199 () rs orientation: forward

Symbol	Name	Function Class
Gm67702	predicted gene, 67702	587 bp downstream
Rr226050	regulatory region 226050	402 bp proximal
Rr226051	regulatory region 226051	1403 bp proximal