rs52077869 SNP Detail

Summary

• ID
  rs52077869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58296830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGACAGA ATACAGTGGG
  TTACAGAACG AACAGGGATG ATCCTGGGAC TGTCAGGGAA GTCAAGGAAA CAAGTTTAAT
  TCAACGGAGG TACTCAAAAG AAGTTTAAGC CATGGGGTGA AAGAGGCATT TAACTCCCTG
  AAATAAATCC TGGCGCTGCA GTTTTGACTC CCATTTGCTT ACTTTCCTCT CCTCGTTCTC
  Y
  CTTTGCGTCT TATTATTTAT TTATTTTTAA ATTTATTTAT GCATCTTGTT TAATTATATT
  AATGAATGCT CTTGCCTGCA TGTACACCTG TACACCAGAA GAGGGCATCA GATCCCTTTA
  GAGATGGTCT GGGAATTAAA CTCAGAACCT CTTGAAGCTC TTAACTGCCA AGCTATCTCA
  CCAGCTCTCA TTTAGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61812779	NES17745635	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52077869					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61812779	NES17745635	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58296830 () rs orientation: forward

Symbol	Name	Function Class
1700066J03Rik	RIKEN cDNA 1700066J03 gene	41 bp downstream
Cpgi5721	CpG island 5721	244 bp distal
Gm48295	predicted gene, 48295	within coordinates
Rr480978	regulatory region 480978	471 bp distal
Rr480979	regulatory region 480979	within coordinates
Rr480980	regulatory region 480980	91 bp proximal
Tssr120063	transcription start site region 120063	492 bp downstream
Tssr120064	transcription start site region 120064	468 bp downstream
Tssr120065	transcription start site region 120065	450 bp downstream