rs52078357 SNP Detail

Summary

• ID
  rs52078357
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151926504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTTCTG AGGGTCCTCA
  GAGAGCCTGC CGGCTCCTGG TGGCCCGTTG TTTCTCCGCT CTGCCGGAAA TAACCTTGCT
  GAGCGTTTGA GGGAAGTGTG AAAAATTGCT GAGCTGACAG TTTTTCTCTC TCTCCCAGCA
  TGTGTAAGTG TGCTGGGTAA ACAAGGAGAA AGAAGGGAGG GGGAGATGAA GAGAAAGAGG
  R
  ATGTATAGAG GGAGAAGAGA AAGGAGGAGG GACAGCCTGG GGCTGGAGGT AGTTCCAGTT
  ATTAGAGAGA TCCTCTTACA AGCCATTTCT GCAGCTTGGG GTGCAGGGTT AAGATGAGAC
  TGGGGGTGAT GGGCGTGGAA GGGGGAACTG TAGATGTAGA AGTCAAATGG GGTTCCTTAT
  AAAGGCACAG AACCCCAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147961605	ENSMUSSNP4857941	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320562103	CHEV_2_151910320	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52078357					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151926504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12435	CpG island 12435	1913 bp distal
Rr567277	regulatory region 567277	1001 bp distal
Rr567278	regulatory region 567278	within coordinates
Rr567279	regulatory region 567279	1561 bp proximal
Scrt2	scratch family zinc finger 2	within coordinates