rs52078584 SNP Detail

Summary

• ID
  rs52078584
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41289651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGT GGTGGAGGTG ATGGGGCATA
  M
  AACAGAGGGA GAGAGAGAGA GAGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136353050	ENSMUSSNP4739200	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322925128	CHEV_9_41186438	CHEVERUD	SCREENING_POP	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52078584					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41289651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21612	CpG island 21612	1557 bp distal
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677031	regulatory region 677031	1711 bp distal
Tssr84498	transcription start site region 84498	1949 bp downstream
Tssr84499	transcription start site region 84499	1921 bp downstream
Tssr84500	transcription start site region 84500	1870 bp downstream
Tssr84501	transcription start site region 84501	1858 bp downstream
Tssr84502	transcription start site region 84502	1447 bp downstream
Tssr84503	transcription start site region 84503	77 bp upstream