rs52078856 SNP Detail

Summary

• ID
  rs52078856
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26319509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTCGGGT TACTTGCTGC
  CAGGCACCAA ACTGAGCCTT CAAGCCACAG CACAAGGCAT GACAAAGCCC TCCCTGCACT
  GCTTGGAATG GGGCAGAGAC ACTCAGCACA GACCTTACCC CAGGCTCTCC ACAGGCCAGA
  ATGTTTACTT GAAGTTGTTG GCCTGCACTT TCTGGTTCAT TGGTACCCAA GATCCAAGAC
  M
  AGATGGGTTT TTGCTGTTGT TGTTTTGTAT TTGTTTTGTT TTGTTTTGTT TTTGTTTTTG
  TTCACTTCAT GGTTAATCTT GTTAGTCAGT GTAATAGGAT CACAAATGAT CTAAGAGACA
  AGCCCACTGG TCTGGTCTGT GAATCACTGC TAGGAAGGAT TAACTGATAG GGAAGACCCT
  CCCTCAGAGT GGCAGCACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145396858	ENSMUSSNP5861053	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
ss325339840	CHEV_17_26237480	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52078856					SNP	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26319509 () rs orientation: forward

Symbol	Name	Function Class
Gm8186	predicted gene 8186	1314 bp upstream
Rr523763	regulatory region 523763	1080 bp distal
Rr523764	regulatory region 523764	979 bp proximal
Tssr146918	transcription start site region 146918	1276 bp upstream