rs52079056 SNP Detail

Summary

• ID
  rs52079056
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54688276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAGAGAT AAAGCTGATT
  CTTTTTTCTC CCTGAAGCAC AAACTAGCTC CTATAGCCAT GTGGTAAGGT CTTGCCTCTC
  CCTTTAAACA GATTTCCCAT CCTGAAAACT TTTTTCCCAG GTAATCAGAA TTTTCCTCAA
  ATTTTTTTCT TTAGTTTCTC TATTCAAAAT TGGAGTGTGT GTGTGTGTGT CTGTGTGTGT
  A
  TGTATGTCTG TGTGTGTGTG TGTGTGTCTG TATGTCTGTG TGTGTATGTA TGTCTGTGTG
  TGTGTGTGTG TGTGTCTGTG TGTCTGTGTG TCTGTGTGTG TGTATGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTAGACAGG ATCTGGAGAC ATAGCTCAGG ATGGCCTCTA ACTGAAGATC
  CTCCCTGAGG TGCAGAAGTA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss139563019	ENSMUSSNP989155	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52079056					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54688276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6457	CpG island 6457	1275 bp distal
Gm24424	predicted gene, 24424	755 bp upstream
Rr289213	regulatory region 289213	1876 bp distal
Rr289214	regulatory region 289214	1076 bp distal
Rr297196	regulatory region 297196	1275 bp distal
Rr389675	regulatory region 389675	1327 bp upstream
Rr404097	regulatory region 404097	1445 bp downstream