rs52079713 SNP Detail

Summary

• ID
  rs52079713
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3072453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT ATTTCTTTAT TTATTTCTTT
  M
  TTTATTTATT TATTTATTTA TTTCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss131630080	ENSMUSSNP4366623	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52079713					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3072453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	811 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Rr369110	regulatory region 369110	1368 bp upstream
Rr402381	regulatory region 402381	1228 bp downstream
Rr441449	regulatory region 441449	within coordinates
Rr441450	regulatory region 441450	466 bp proximal
Rr441451	regulatory region 441451	873 bp proximal
Rr441452	regulatory region 441452	1032 bp proximal
Rr441453	regulatory region 441453	1579 bp proximal
Rr441454	regulatory region 441454	1971 bp proximal
Tssr100004	transcription start site region 100004	1546 bp upstream
Tssr100005	transcription start site region 100005	1590 bp upstream
Tssr106442	transcription start site region 106442	1452 bp downstream