rs52079990 SNP Detail

Summary

• ID
  rs52079990
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144555110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCCTTC AGCTGTGGCA
  TAGTTTTGCT GGGTATAGCA GTCTAGGCTT GCAGTCTTTG TCTGTTATAA CTTGGAGTGC
  ATTGCTCCAG GGACTTCTGT CATTCAGAGT TCCCATTGAG AAATAAGCTG TTATACTGAT
  GGGTATTCCT TTATATGTAG CTTTATATTT TTTCTCTTGC AGTTTCCTTC CTTCCTTCCT
  C
  CCTCCCTCCC TCTCTCTCTT TTCCTCCCTT CCCTTCCCTC CCCTCCCCTC CCCTCCCCTC
  CCCTCCCCTC CCCTCCCCTC CCCTCCCCTT TCTTTTTTTG AGACAGGGGT TCTCTGCATA
  GCCCTTGCTG TCCTGGAACT CACTCTGTAG ACCAGGCTGG CCTCGAACTC AGAAATTCGC
  CTGCCTCTGC CTCCCAAGTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	FVB/NJ	I/LnJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
ss355988969	MGP_WTSI_2_144538926	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	FVB/NJ	I/LnJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
rs52079990					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355988969	MGP_WTSI_2_144538926	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144555110 () rs orientation: forward

Symbol	Name	Function Class
Dtd1	D-tyrosyl-tRNA deacylase 1	within coordinates
Rr374001	regulatory region 374001	1561 bp upstream
Tssr20549	transcription start site region 20549	1593 bp upstream
Tssr20550	transcription start site region 20550	1655 bp upstream
Tssr26613	transcription start site region 26613	1368 bp downstream