rs52080030 SNP Detail

Summary

• ID
  rs52080030
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158495029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTAAAGGA CAACTATGGG
  TGTCACTCTT GAAGCACCAG CCATCTTGTT TGCTGAGTAA GTTCAATAGA CTGGCTTATT
  GATGAGCAGC AGGGTTGTGT TTCTCTCTAC CTTCCCCGTG CCGGGATTAC ATATAGATAC
  TACAATTGGA CCTTGCTTTT CTTTCTCTTT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  C
  TCTTTCTTTC TTTCTTTCTT TCTTTCTTTT CGAGACAGGG TTTCGCTGTA TAGCCCTGGC
  TGTCCTGGAA CTCACTGTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCC ACCTGCCTCT
  GCCTCCCAAG TGCTGGGATT AAAGGCGTGC GCTTTTCTTA AGACTTTTGG GTCTTCTAAA
  CTGATTTTGT GCCCTTCTGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134519880	ENSMUSSNP6054053	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52080030					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158495029 () rs orientation: forward

Symbol	Name	Function Class
Rr8414	regulatory region 8414	1428 bp distal
Rr9419	regulatory region 9419	within coordinates
Rr9420	regulatory region 9420	972 bp proximal
Sh3kbp1	SH3-domain kinase binding protein 1	within coordinates