rs52080278 SNP Detail

Summary

• ID
  rs52080278
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30429703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCCACTAT CCTCTGGCAT CTTTCCCCTT TACCAGGCGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTACGT GTACGCACTC
  R
  CGCGCTCGCC CTCTTGTCAG CCTCCCCCAC TATCCTCTGG CATCTTTCCC CTTTACCAGG
  CAACAAGCTT CACGAAGTTG TCATTGAGGG CAATTCCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148686858	ENSMUSSNP4956364	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss322136282	CHEV_7_31515297	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52080278					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30429703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	266 bp distal
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	within coordinates
Rr400253	regulatory region 400253	419 bp downstream
Rr644901	regulatory region 644901	1362 bp distal
Rr644902	regulatory region 644902	1289 bp distal
Rr644903	regulatory region 644903	639 bp distal
Tmem147	transmembrane protein 147	744 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65802	transcription start site region 65802	635 bp downstream
Tssr65803	transcription start site region 65803	519 bp downstream
Tssr65804	transcription start site region 65804	472 bp downstream
Tssr65805	transcription start site region 65805	896 bp upstream
Tssr71842	transcription start site region 71842	1441 bp upstream
Tssr71843	transcription start site region 71843	825 bp upstream
Tssr71844	transcription start site region 71844	777 bp upstream
Tssr71845	transcription start site region 71845	722 bp upstream