rs52081113 SNP Detail

Summary

• ID
  rs52081113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22715235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAACTGT GCCAGACCAT
  AGCTTCTCCT CTCCATCCCT CCCACCCTCC CTCTTACCTT CCTTCCTCCT CTCCTTTGCT
  CCCTCCCTCC CTCTCCCTCC TCCTCTCTGT CACTTCCTCC CTCTATCCCA CCTCTCCTTC
  CCCCCTCCCT CCCTCTGTCC CACCTCTTCT TGCCCCTCTT GTTCCAGACC ATCTTTCCCA
  Y
  GTGTTCTCAT TTTCATTCTC AGCCTCTCCC AGTGTCTACT CTGGTGGAGT TTGTAATAGC
  TGCCACTGAC TGTACTGCAA AAGAAGTCAC AGATCCAGCC AAATGCAACC TGCTGGCAGA
  GAAGGTGAGT GGGCCAGACC CTAGGGCTCC CAATCTGGTT GTGGAACAAA GTATCTTTTT
  GCAGTTTATA TCTTGGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63681295	NES17064305	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52081113					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63681295	NES17064305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22715235 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Rr513337	regulatory region 513337	1689 bp distal
Tssr4819	transcription start site region 4819	1144 bp downstream
Tssr4820	transcription start site region 4820	528 bp downstream
Tssr137567	transcription start site region 137567	1700 bp downstream
Tssr137568	transcription start site region 137568	1669 bp downstream
Tssr137569	transcription start site region 137569	1648 bp downstream
Tssr137570	transcription start site region 137570	1631 bp downstream
Tssr137571	transcription start site region 137571	1293 bp downstream
Tssr137572	transcription start site region 137572	1194 bp downstream
Tssr137573	transcription start site region 137573	1184 bp downstream
Tssr137574	transcription start site region 137574	1165 bp downstream
Tssr137575	transcription start site region 137575	1155 bp downstream
Tssr137576	transcription start site region 137576	470 bp downstream
Tssr137577	transcription start site region 137577	53 bp downstream
Tssr137578	transcription start site region 137578	8 bp upstream
Tssr137579	transcription start site region 137579	1630 bp upstream
Tssr137580	transcription start site region 137580	1680 bp upstream
Tssr140506	transcription start site region 140506	1624 bp upstream
Tssr140507	transcription start site region 140507	1261 bp upstream
Tssr140508	transcription start site region 140508	1219 bp upstream
Tssr140509	transcription start site region 140509	1201 bp upstream
Tssr140510	transcription start site region 140510	1153 bp upstream
Tssr140511	transcription start site region 140511	1139 bp upstream
Tssr140512	transcription start site region 140512	72 bp downstream
Tssr140513	transcription start site region 140513	83 bp downstream
Tssr140514	transcription start site region 140514	116 bp downstream
Tssr140515	transcription start site region 140515	1691 bp downstream
Tssr140516	transcription start site region 140516	1710 bp downstream