rs52081376 SNP Detail

Summary

• ID
  rs52081376
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117161170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTT CTTGAAAGTG TGTGTGTGTG
  T
  GTGTGTGTGT GTGTGTGTGT GTGTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324842589	CHEV_14_117322980	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52081376					SNP	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss146924573	ENSMUSSNP2716400	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117161170 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	1411 bp proximal
Gpc6	glypican 6	1557 bp upstream
Rr497535	regulatory region 497535	1182 bp proximal
Tssr127141	transcription start site region 127141	1447 bp upstream
Tssr127142	transcription start site region 127142	1501 bp upstream
Tssr127143	transcription start site region 127143	1533 bp upstream
Tssr127144	transcription start site region 127144	1621 bp upstream
Tssr127145	transcription start site region 127145	1747 bp upstream
Tssr127146	transcription start site region 127146	1758 bp upstream
Tssr127147	transcription start site region 127147	1787 bp upstream
Tssr127148	transcription start site region 127148	1800 bp upstream