rs52082024 SNP Detail

Summary

• ID
  rs52082024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48231659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGGAACTA TAACTCTAGC TCCACGGGAT CTGATGACCT
  CTTCTGGATT CTATGGGCAC TGAATGCACA TGGTACATAC AGGCAAAACA TCCATGCACA
  Y
  AAAGAAAAAA TATAATAAAA TAAAAAATAA AGATCAGATA AGAGCAAATT ATTATTATTA
  CTATTGTTAT TATTATTATT ATTATTATTA TTATTATTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136451631	ENSMUSSNP2046718	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322953175	CHEV_9_48128442	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52082024					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48231659 () rs orientation: forward

Symbol	Name	Function Class
Nxpe2	neurexophilin and PC-esterase domain family, member 2	within coordinates
Nxpe4	neurexophilin and PC-esterase domain family, member 4	within coordinates
Tssr89370	transcription start site region 89370	983 bp upstream