rs52082140 SNP Detail

Summary

• ID
  rs52082140
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121137575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTCTTGTA ACACACACTC ACAGTGGTTG TTACATTTAG
  AAACTTTAGC CTGTCTTCTC ATAAGTAAAT GCATCCATGG GAAAAATATG CCTGAGGGGC
  A
  TGATTCTTTT CTTCCTTCTC CTCTTCCTCC TCCTCTTCCT CTTCCTCCTC AACTTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135718889	ENSMUSSNP4591532	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52082140					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121137575 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	within coordinates
Gm33310	predicted gene, 33310	1027 bp upstream
Gm66111	predicted gene, 66111	564 bp upstream
Rr367544	regulatory region 367544	1094 bp upstream
Tssr35413	transcription start site region 35413	589 bp upstream
Tssr35414	transcription start site region 35414	555 bp upstream