rs52082211 SNP Detail

Summary

• ID
  rs52082211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143830135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAGAAGC CTACCATCTA
  TTTGGTCCCC TCACCACCCT CCATATTGTC AGATTTCCTG AGTGCTATTG TCCCAACTTT
  CTGTGTTTTC TACAGCTGAG CCATTATTTT GTGTGAGTTC TTTAGCTGGC TGATTACCAT
  TCTTGTATTA GTTTCCACCT CGTCAGCAAA GTAAGATTCA TCCCAACATA ATCTGTACAC
  R
  GAATGGGACA CATCATCTGA ATCACACACA CACACACACA CACACACACA CACACACATA
  CACACACATA CACACACACA CACACACACA CACACACACA CACACACACA CACACATACA
  CACACACACA CATACACACA CACACACACA CACACACACA CACACACACA CACACACCCC
  TCTTCACTTA GGCCTGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60852803	NES16001058	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52082211					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852803	NES16001058	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143830135 () rs orientation: forward

Symbol	Name	Function Class
Ankrd61	ankyrin repeat domain 61	within coordinates
Eif2ak1	eukaryotic translation initiation factor 2 alpha kinase 1	within coordinates
Rr624304	regulatory region 624304	854 bp distal
Tssr54383	transcription start site region 54383	1669 bp downstream
Tssr54384	transcription start site region 54384	1708 bp downstream
Tssr54385	transcription start site region 54385	1761 bp downstream