rs52083231 SNP Detail

Summary

• ID
  rs52083231
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32524433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATACCCACAT ACTGGGAGGA GAGAATGAAG TCCTACAAGC
  TCTCCTCGGC CACACATTTA AAAGAAAAAA ATAGTAAACA AAGTAATTAA AAATAAAAGG
  C
  ATCCAATTAC CAATTACTTT TTGTTTTAAT TATTTTTATA AAGTTTTTTG TTTTGTGATT
  TTGGTTATTT ATTTATTTAT TTATTTATGG TTTCCTTTG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148847981	ENSMUSSNP1238919	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324311989	CHEV_13_32432319	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52083231					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32524433 () rs orientation: forward

Symbol	Name	Function Class
A730091E23Rik	RIKEN cDNA A730091E23 gene	within coordinates
Cpgi5422	CpG island 5422	1495 bp distal
Gmds	GDP-mannose 4, 6-dehydratase	1710 bp upstream
Rr369665	regulatory region 369665	1530 bp downstream
Rr476844	regulatory region 476844	1702 bp distal
Rr476845	regulatory region 476845	1220 bp distal
Tssr121995	transcription start site region 121995	1908 bp upstream
Tssr121996	transcription start site region 121996	1886 bp upstream
Tssr121997	transcription start site region 121997	1790 bp upstream