rs52083550 SNP Detail

Summary

• ID
  rs52083550
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126622347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCTCCA CTCTCCCCTC
  TCCCCCATCA ACTTGGAGCT CACCAAGGCT GGGAGGGAAG TGGCTGAGAG CTCACTGGTA
  CCCCCTCTGC CCCAGAGAGG GAGCCCACAG CTGTGGGGGG GGCTGCCACC ACTGCTGCTG
  CCGCCGCCGC CGCTGCTGCT GCCGCTGCCG CCATTGGACA AACCTCACCA GTACCTATAG
  S
  GAGAAACACC AAGGATCACA GCACAACCTA AATGGCAAGA AACATGTTCC ATACCCCAGA
  CTTTTCAACT ATTTCCCTAT TTCCCCTGGG ACACAGCCGT TACTTCCTAT CTGGTCCCCA
  GAGGCTTCGG CCTGCCTGCT TACCCAGACT GAGCATGTCC ATACTGCCCT CTCTGGATCC
  CAAGGCTCCC TAATCTGAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079232	MGP_WTSI_7_134166689	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs52083550					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079232	MGP_WTSI_7_134166689	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126622347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19726	CpG island 19726	1746 bp distal
Gm53372	predicted gene, 53372	911 bp downstream
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	within coordinates
Prrt2	proline-rich transmembrane protein 2	1964 bp upstream
Rr166710	regulatory region 166710	within coordinates
Rr368440	regulatory region 368440	1187 bp upstream
Tssr69153	transcription start site region 69153	1813 bp downstream
Tssr69154	transcription start site region 69154	1761 bp downstream
Tssr69155	transcription start site region 69155	1728 bp downstream
Tssr74901	transcription start site region 74901	1986 bp upstream
Tssr74902	transcription start site region 74902	1959 bp upstream
Tssr74903	transcription start site region 74903	1580 bp upstream
Tssr74904	transcription start site region 74904	1540 bp upstream
Tssr74905	transcription start site region 74905	1724 bp downstream
Tssr74906	transcription start site region 74906	1906 bp downstream
Tssr74907	transcription start site region 74907	1971 bp downstream