rs52083550 SNP Detail

Summary

• ID
  rs52083550
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126622347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCTCCA CTCTCCCCTC
  TCCCCCATCA ACTTGGAGCT CACCAAGGCT GGGAGGGAAG TGGCTGAGAG CTCACTGGTA
  CCCCCTCTGC CCCAGAGAGG GAGCCCACAG CTGTGGGGGG GGCTGCCACC ACTGCTGCTG
  CCGCCGCCGC CGCTGCTGCT GCCGCTGCCG CCATTGGACA AACCTCACCA GTACCTATAG
  S
  GAGAAACACC AAGGATCACA GCACAACCTA AATGGCAAGA AACATGTTCC ATACCCCAGA
  CTTTTCAACT ATTTCCCTAT TTCCCCTGGG ACACAGCCGT TACTTCCTAT CTGGTCCCCA
  GAGGCTTCGG CCTGCCTGCT TACCCAGACT GAGCATGTCC ATACTGCCCT CTCTGGATCC
  CAAGGCTCCC TAATCTGAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079232	MGP_WTSI_7_134166689	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs52083550					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079232	MGP_WTSI_7_134166689	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126622347 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm53372	predicted gene, 53372			911 bp downstream
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Prrt2	proline-rich transmembrane protein 2			1964 bp upstream
Rr368440	regulatory region 368440			1187 bp upstream
Rr655671	regulatory region 655671			1778 bp distal
Rr655672	regulatory region 655672			1815 bp distal
Rr655673	regulatory region 655673			874 bp distal
Rr655674	regulatory region 655674			1606 bp proximal
Tssr69153	transcription start site region 69153			1813 bp downstream
Tssr69154	transcription start site region 69154			1761 bp downstream
Tssr69155	transcription start site region 69155			1728 bp downstream
Tssr74901	transcription start site region 74901			1986 bp upstream
Tssr74902	transcription start site region 74902			1959 bp upstream
Tssr74903	transcription start site region 74903			1580 bp upstream
Tssr74904	transcription start site region 74904			1540 bp upstream
Tssr74905	transcription start site region 74905			1724 bp downstream
Tssr74906	transcription start site region 74906			1906 bp downstream
Tssr74907	transcription start site region 74907			1971 bp downstream