rs52085304 SNP Detail

Summary

• ID
  rs52085304
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70346601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCCTTCA TATTTCTTAG
  TGAAAGAGAA AATGCAAAAC CATCTTATTC TTTTTGTTTG TTTGTTTGTT TTGAGACAGG
  GTTTCTCTGT GTAGCCCTGG CTATTCTGGA ACTCACTCTG TAGACCAGGC TGGCCTCAAA
  CTCAGAAATC CGCCTGCCTC CGCCTCCCAA GTGCTGGGAT TAAAGGCGTG CATCACCATG
  M
  CCGGCTTAAG CCATCTTATT CTTAAAAAAA AAAAAAAAAA AAAAAAAAGA CTTTCTAGTT
  AACACAGTTA CTAGATAAGA AGAAAGCATA GGTTCAAGTA TTTGTAAAGA CAAGGAACAT
  TTTATCATTA TTTTCCTGTA TCTGTTTGGA AACTCTAATT AGTCTCCCTT CTGCAGTTGA
  ATTTCTAAAG CTATACAGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139680812	ENSMUSSNP645460	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52085304					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70346601 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bin3	bridging integrator 3			Intron
				Noncoding-Transcript-Variant
Rr494842	regulatory region 494842			1720 bp distal
Rr494843	regulatory region 494843			530 bp proximal
Rr494844	regulatory region 494844			1819 bp proximal
Rr494845	regulatory region 494845			1913 bp proximal