rs52086669 SNP Detail

Summary

• ID
  rs52086669
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117429502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCTGTAA GTCTAGATCC
  AGAGGGTCTG AAGCCCTCTT TTGTACTCTG CATGTATCTG CGCATGCATG GGGCACACAC
  ACACACACAC ACACACACAC ACACACGGTA GCACAGAAAC AAAAATAAAT CTAATAAAAA
  AATGAAAGAA AAAATTTTTT TCAAAATCAA ATATCTTCTT GCCAAAGCTC CTGGTTCCAC
  R
  CTAGCATGCT GAAAATGAGC TACTAATCAA GATCACTGCT CAGCTGCCTT TAGAGGCAGA
  GCCCCTAGAA CTCGTAAGTA TCGTGATACC TTTCTCATTG AATTATCATT TTTCTGTTGA
  TGATTTATTT TGCTTTCAAG GCATAATAAT ATTGTGTTGT TAACAACAGA CAAATTGTAC
  CCAGAAGGAC TCCTTTTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61320221	NES16929022	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		G	A	A	G		A
ss323497991	CHEV_10_117030653	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52086669					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61320221	NES16929022	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117429502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2233	CpG island 2233	460 bp proximal
Gm63651	predicted gene, 63651	1129 bp upstream
Kifc5c-ps	kinesin family member C5C, pseudogene	756 bp upstream