rs52086747 SNP Detail

Summary

• ID
  rs52086747
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:44438905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGC ACTATTTGTG TGTGTGTGTG
  T
  GAGAGAGAGA GAGAGAGAGA GAGAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136396648	ENSMUSSNP4032301	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322941049	CHEV_9_44335691	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52086747					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44438905 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	Intron
Rr401337	regulatory region 401337	817 bp downstream
Rr677693	regulatory region 677693	697 bp distal
Rr677694	regulatory region 677694	749 bp proximal
Tssr89167	transcription start site region 89167	1636 bp upstream
Tssr89168	transcription start site region 89168	1185 bp upstream
Tssr89169	transcription start site region 89169	1168 bp upstream
Tssr89170	transcription start site region 89170	1107 bp upstream
Tssr89171	transcription start site region 89171	1093 bp upstream