rs52087956 SNP Detail

Summary

• ID
  rs52087956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30731002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCAGTGAGCA CACGCCCGTT ACTAAACCAT CTTCCCAGGC
  TGAGTTAGTT ATTATATGAA GCATTCTGAC ATTTTCTTTC TTTTAATATT TATTTAGTTT
  Y
  GTTTTTTTAA AATTGTTTTT GAAACGGGGT CTCACTATGT GTGTAGCTCT AGCTGGCCTA
  GAACTTGCTA TATAGATAGG CTGGACTTAA CTCACAGAGA T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148696725	ENSMUSSNP6505469	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52087956					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30731002 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	1151 bp downstream
Rr644976	regulatory region 644976	639 bp distal
Rr644977	regulatory region 644977	211 bp proximal
Rr644978	regulatory region 644978	1916 bp proximal
Tssr65829	transcription start site region 65829	1276 bp upstream