rs52088374 SNP Detail

Summary

• ID
  rs52088374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121990022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACA ACAAACACAA ACAACGACAA
  Y
  AACCCTGAAA TCTAAGAAAA CAAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147410319	ENSMUSSNP1966243	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320487265	CHEV_2_121985277	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52088374					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121990022 () rs orientation: forward

Symbol	Name	Function Class
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr373780	regulatory region 373780	within coordinates
Rr563916	regulatory region 563916	701 bp distal
Rr563917	regulatory region 563917	1069 bp proximal
Rr563918	regulatory region 563918	1170 bp proximal
Rr563919	regulatory region 563919	1316 bp proximal
Rr563920	regulatory region 563920	1925 bp proximal
Trim69	tripartite motif-containing 69	1167 bp upstream
Tssr626	transcription start site region 626	1155 bp upstream
Tssr19830	transcription start site region 19830	1142 bp upstream
Tssr19831	transcription start site region 19831	1160 bp upstream