rs52088745 SNP Detail

Summary

• ID
  rs52088745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15653032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCATGGA GGTCACAAGA
  ACACATCAGA TTCCCTGGAA CTGGAGTTAG GAAGCATTGG GGACCGTCAC ATGGTGCTGG
  GACTTGGACC CAGGCAAGAG ACACGGTTGT AGCTGGCATC GAGCTCACTG TGGAGTCAAG
  CGTAACTCTG AACGCTTGTT CCTCAGGCCT CTCTACCTTC AAAATGGTGG GGTCACAGGC
  Y
  TTTCCCACCA CGTCGATTCT TACATGTTTT GTTTCTGTAT GTGTATGAAG TGTTTGCATG
  TATGTCTGTG CACCATGTGT GTGCCGTGCC TTCAGAGGTC AGGAGGGGGT TGTCAGCTCC
  TCCGGAGCTG GAGTTATAGA TAACTAGGAA CCACCTTATC AATACCAGGA ACTGACCCCA
  CATCCTCCGC AAGAGCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60971321	NES16156089	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52088745					SNP	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60971321	NES16156089	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15653032 () rs orientation: forward

Symbol	Name	Function Class
Rr155058	regulatory region 155058	232 bp distal
Rr167058	regulatory region 167058	1368 bp proximal
Selenow	selenoprotein W	within coordinates
Tssr64566	transcription start site region 64566	1725 bp downstream
Tssr70678	transcription start site region 70678	1674 bp upstream
Tssr70679	transcription start site region 70679	992 bp downstream
Tssr70680	transcription start site region 70680	1560 bp downstream
Tssr70681	transcription start site region 70681	1671 bp downstream