rs52088853 SNP Detail

Summary

• ID
  rs52088853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:68000055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAACCCTA CTTCAGTTCC
  TAGCACCCAC ACTGGGCAGC TGATAGTCAC TGGTCATCTA GACCTAGAAG GTCTGATAAT
  CTCTTCTGGC CTCAACAGGC ATCTATATCC ACGTGGCACA TGTGCACACA GAGCGAGAGA
  GTGAGAGGGA AAGTGAGAGG GAGAGAGGGA GAGGGAGAGG GGGAGGGGGG CACATACACA
  Y
  ATATAAATAT ATATAAAGTT AAAAAGATCT TTAAAACATA TGTGTTAATT GTCTAGAACC
  AAAGGCAGTT AGCACTGCAG TGTGTAGGCC TGGCTGTACT CCAGTTTATC TACGCAGCTG
  GCAAGTGCAA CTCCAACCAT ATCTTAAAGT GCTGAAATAA CCAATTCTTT ATTTTTTTTA
  AAGAAATAAA CATCATATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147147224	ENSMUSSNP426199	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52088853					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:68000055 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Gm51770	predicted gene, 51770	within coordinates
Gm66190	predicted gene, 66190	within coordinates
Gm66212	predicted gene, 66212	591 bp downstream
Rr401964	regulatory region 401964	1124 bp upstream
Rr433213	regulatory region 433213	891 bp proximal
Rr433214	regulatory region 433214	1194 bp proximal