rs52089300 SNP Detail

Summary

• ID
  rs52089300
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85698143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCGCTGTG AAGATGCGAG
  GAGGTGGGAC AATGAATTTA TAGCGGCGTG CCATCCTGCA ATGGCAATTT CAACAATTCG
  TCACTGCACG CTGCCTCTTA AAGGGAGAGC TTCCCCCACC ACTCCCACCC TTCCCGGTCC
  GCGCCTAATC TGATGGGGGA GGGAGCAGCG AGAGGAGGAG GGTGATCGAG GAAAGGCAGA
  S
  CGGGAAGGAG GAAGGGGCCA GAACCTAGCA AGGTGGAAGG AGGGACAAAG GAGGGAGTAA
  GGGTGAGAAA GAGATTGAGA GAGAAAAAGT ATTTGGGCAG AAAACAAGAA AATTCTCTTG
  GCCTCATTTA AAGCCACAGC AACTCCGGTT CTGTGTGGTA TTTCACAACC AATCGGGGTT
  GGCTAACCTC GGCTTACCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60245675	NES15750933	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52089300					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60245675	NES15750933	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85698143 () rs orientation: forward

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	130 bp upstream
Cpgi8391	CpG island 8391	783 bp distal
Cpgi8392	CpG island 8392	within coordinates
Gm46558	predicted gene, 46558	within coordinates
Rr319329	regulatory region 319329	1743 bp distal
Rr325517	regulatory region 325517	within coordinates
Tssr141913	transcription start site region 141913	1899 bp upstream
Tssr141914	transcription start site region 141914	1003 bp upstream
Tssr141915	transcription start site region 141915	975 bp upstream
Tssr141916	transcription start site region 141916	946 bp upstream
Tssr141917	transcription start site region 141917	622 bp upstream
Tssr141918	transcription start site region 141918	564 bp upstream
Tssr141919	transcription start site region 141919	510 bp upstream
Tssr141920	transcription start site region 141920	184 bp upstream
Tssr141921	transcription start site region 141921	122 bp upstream
Tssr141922	transcription start site region 141922	92 bp downstream
Tssr141923	transcription start site region 141923	537 bp downstream