rs52090099 SNP Detail

Summary

• ID
  rs52090099
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103639435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT CTCTCTGTCT CTCTCTCTCT
  S
  TGTGTGTGTG TCTGTGTCTC TGTGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss147139049	ENSMUSSNP5383857	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320442798	CHEV_2_103649247	CHEVERUD	SCREENING_POP	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52090099					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103639435 () rs orientation: forward

Symbol	Name	Function Class
4930547E08Rik	RIKEN cDNA 4930547E08 gene	within coordinates
Gm13878	predicted gene 13878	1796 bp downstream
Gm75184	predicted gene, 75184	within coordinates