rs52090883 SNP Detail

Summary

• ID
  rs52090883
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCAGTTT TTTATTATTA
  TAGTTTGAGA CAGGGTCTCA AGGATCGGCC TGCCTCAGCC CGCGGAGTGC TGGGATTAAC
  AACATGACTT GTGCTCATTA TTATTATTAT TGTTATTATT ATTATTATTA TTATTATTAT
  TATTATTATT ATTATTATTA TTATTATTTT CGAGACAGGG TTTCTCTGTG AAGTCCTGGC
  W
  GTCCTGGAAC TCACTCTGTA GACCGGGCTG GCCTCGAACT CAGAAATCTG CCTGCCTCTG
  CCTCCCGAGT GCTGGGATAA AAGGTGTGCG CCACCAACGC CCGGCTACCT CATTATTTTT
  TAATGTATAA ATGAGCTTGA AAGTGTGTGT GGGGTGGTGC AGTGACTCAT TCTCTCCACT
  AGGGTTCAGT CAGGCCCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382200154	MGP_WTSI_10_127649842	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	A	A	T	A	A	A	T	A	T	T	T	T	T	T	A	T	A	T	T	T	T	T	T	A	T	A	A	T	T	A	A	A	A	A	A	T	T	T	T	T	A	A	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs52090883					SNP	T	A	A	A	T	A	A	A	T	A	T	T	T	T	T	T	A	T	A	T	T	T	T	T	T	A	T	A	A	T	T	A	A	A	A	A	A	T	T	T	T	T	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382200154	MGP_WTSI_10_127649842	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	732 bp distal
Cpgi2388	CpG island 2388	293 bp proximal
Rr224447	regulatory region 224447	454 bp distal
Rr224448	regulatory region 224448	within coordinates
Rr402345	regulatory region 402345	775 bp downstream
Rr402346	regulatory region 402346	18 bp upstream
Spryd4	SPRY domain containing 4	992 bp upstream
Tssr99849	transcription start site region 99849	1011 bp upstream
Tssr99850	transcription start site region 99850	963 bp upstream