rs52091080 SNP Detail

Summary

• ID
  rs52091080
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155925999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCTGTGGA CAGAGGCGAT GAAGGGGTGT ACACCTGCAA
  CCTGCACCAT CACTACTGCC ACCTCGATGA GAGCCTGGCT GTGCGCCTCG AGGTTACAGA
  C
  GATCGTGAGT GTGTCCCTTC CTCTCCTTCG CTATTTCCAT CCCTATCCTC CTTACCCCCA
  ATCTTCCCCC TCCTCACCTC TGCGAGGTGA TCTGACTGC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148117665	ENSMUSSNP721284	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52091080					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155925999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	within coordinates
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	1364 bp upstream
Rr398927	regulatory region 398927	58 bp downstream
Tssr40724	transcription start site region 40724	1858 bp downstream
Tssr40725	transcription start site region 40725	1838 bp downstream
Tssr40726	transcription start site region 40726	1780 bp downstream
Tssr40727	transcription start site region 40727	1718 bp downstream
Tssr40728	transcription start site region 40728	1702 bp downstream
Tssr40729	transcription start site region 40729	434 bp downstream
Tssr40730	transcription start site region 40730	404 bp downstream
Tssr40731	transcription start site region 40731	375 bp downstream
Tssr40732	transcription start site region 40732	367 bp downstream
Tssr40733	transcription start site region 40733	66 bp downstream
Tssr40734	transcription start site region 40734	1509 bp upstream
Tssr44980	transcription start site region 44980	487 bp upstream
Tssr44981	transcription start site region 44981	438 bp upstream